"ABC_PCM.c": A program code used in an analysis of weevil rostrum length in Chapter 17. Programs were written in C and should be run in a Unix (Linux) machine. All data can be input in the .c file. Each branch is labeled with consecutive numbers, which corresponded with its descendent node (shown in a parenthesis on the phylogeny below).
Since we are interested in estimating trait values of internal nodes at the end of branch 0 and 1, we output a value of MRCA (theta), P[0], and P[1] (corresponding to species A, B, and C in Fig 17.2).
Compile the C code as
>> gcc ABC_PCM.c
Run the program
>> ./a.out
The following output file will be created (in /Users in the case of Mac):
|
theta |
k |
mu |
P[0] |
P[1] |
loglik |
bar |
|
4.54 |
3.5 |
5.73 |
4.6 |
4.76 |
-10.93 |
0.01 |
|
5.17 |
6.44 |
6.05 |
4.35 |
2.65 |
-6.06 |
0.73 |
|
4.56 |
9.84 |
2.79 |
4.81 |
4.38 |
-7.12 |
0.14 |
|
3.78 |
2.06 |
15.86 |
5.76 |
4.06 |
-7.58 |
0.01 |
|
4.47 |
6.76 |
2.96 |
3.76 |
3.03 |
-10.89 |
0 |
|
5.24 |
3.49 |
7.73 |
4.94 |
4.89 |
-7.55 |
0.12 |
|
4.9 |
3.57 |
7.43 |
4.02 |
4.13 |
-7.39 |
0.08 |
|
3.85 |
1.93 |
18.23 |
3.58 |
3.53 |
-6.26 |
0.72 |
|
5.57 |
2.57 |
9.73 |
3.89 |
3.39 |
-6.51 |
0.32 |
|
4.8 |
10.71 |
3.19 |
3.57 |
4.01 |
-11.92 |
0 |
|
4.28 |
3.88 |
5.78 |
3.19 |
3.4 |
-9.06 |
0.02 |
|
5.33 |
6.97 |
3.76 |
3.39 |
3.29 |
-10.06 |
0.01 |
|
5.93 |
2.84 |
9.25 |
5.03 |
5.05 |
-10.71 |
0.01 |
|
5.5 |
3.2 |
8.74 |
4.36 |
2.94 |
-5.04 |
0.77 |
|
3.9 |
9.38 |
1.87 |
4 |
3.53 |
-7.55 |
0.07 |
|
4.32 |
6.93 |
4.21 |
3.36 |
3 |
-7.86 |
0.1 |
|
5.25 |
4.64 |
5.66 |
4.22 |
3.58 |
-7.24 |
0.27 |
|
5.38 |
2.96 |
9.86 |
5.1 |
2.97 |
-7.51 |
0 |
|
4.56 |
3.6 |
7.35 |
4.48 |
3.37 |
-7.81 |
0.12 |
|
3.52 |
3.4 |
7.68 |
2.58 |
3.36 |
-10.49 |
0.01 |
|
6.4 |
2.03 |
10.3 |
5.37 |
5.33 |
-7.2 |
0.03 |
|
4.86 |
15.97 |
2.06 |
4.34 |
3.17 |
-13.92 |
0 |
|
5.01 |
4.3 |
4.45 |
5.16 |
4.29 |
-7.27 |
0.06 |
|
4.34 |
3.57 |
9.6 |
4.52 |
4.42 |
-9.95 |
0.01 |
|
5.19 |
13.08 |
1.73 |
4.28 |
4.25 |
-7.76 |
0.13 |
|
6.04 |
11.36 |
3.76 |
4.03 |
3.17 |
-7.03 |
0.23 |
|
5.2 |
2.54 |
5.77 |
3.53 |
3.22 |
-6.47 |
0.34 |
|
3.87 |
5.96 |
4.61 |
3.46 |
2.59 |
-7.31 |
0.19 |
|
5.87 |
6.13 |
3.79 |
4.27 |
3.55 |
-4.77 |
0.51 |
|
5.97 |
4.51 |
7.79 |
3.8 |
3.91 |
-10.87 |
0 |
|
4.62 |
3.17 |
13.55 |
3.75 |
2.68 |
-6.72 |
0.2 |
|
6.52 |
2.04 |
14.34 |
3.94 |
3.33 |
-8.14 |
0.1 |
|
6.15 |
1.85 |
21.83 |
6.95 |
4.54 |
-6.99 |
0.19 |
|
4.05 |
2.03 |
17.96 |
4.55 |
3.46 |
-6.55 |
0.09 |
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